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"0.5.5", "date": "2019-02-11" }, { "version": "0.8.0", "date": "2019-04-04" }, { "version": "0.8.2", "date": "2019-07-08" }, { "version": "0.8.6", "date": "2020-07-14" }, { "version": "0.8.7", "date": "2021-03-20" }, { "version": "0.9.3", "date": "2021-07-28" }, { "version": "0.9.5", "date": "2022-07-01" }, { "version": "0.9.6", "date": "2023-08-24" } ], "_exports": [ "check_simresults", "dsairmmenu", "generate_documentation", "generate_fctcall", "generate_ggplot", "generate_modelsettings", "generate_plotly", "generate_shinyinput", "generate_text", "run_model", "simulate_acutevirusir_ode", "simulate_bacteria_fit", "simulate_basicbacteria_discrete", "simulate_basicbacteria_modelexploration", "simulate_basicbacteria_ode", "simulate_basicvirus_fit", "simulate_basicvirus_modelexploration", "simulate_basicvirus_ode", "simulate_basicvirus_stochastic", "simulate_chronicvirusir_ode", "simulate_confint_fit", "simulate_drugresistance_stochastic", "simulate_extendedbacteria_ode", "simulate_fludrug_fit", "simulate_modelcomparison_fit", "simulate_modelvariants_ode", "simulate_pkpdmodel_ode", "simulate_usanalysis", "simulate_virusandir_ode", "simulate_virusandtx_ode" ], "_datasets": [ { "name": "hayden96flu", "title": "Influenza virus load data", "object": "hayden96flu", "class": [ "data.frame" ], "fields": [ "HoursPI", "txtime", "LogVirusLoad", "LOD" ], "rows": 27, "table": true, "tojson": true }, { "name": "schirm20strep", "title": "Streptococcus pneumoniae infection data", "object": "schirm20strep", "class": [ "data.frame" ], "fields": [ "time", "value", "quantity" ], "rows": 99, "table": true, "tojson": true } ], "_help": [ { "page": "check_simresults", "title": "A function that checks if a call to simulation function worked", "topics": [ "check_simresults" ] }, { "page": "dsairmmenu", "title": "The main menu for the DSAIRM package", "topics": [ "dsairmmenu" ] }, { "page": "generate_documentation", "title": "A helper function which processes and displays the documentation part for each app", "topics": [ "generate_documentation" ] }, { "page": "generate_fctcall", "title": "A helper function that produces a call to a simulator function for specific settings", "topics": [ "generate_fctcall" ] }, { "page": "generate_ggplot", "title": "A helper function that takes simulation results and produces ggplot plots", "topics": [ "generate_ggplot" ] }, { "page": "generate_modelsettings", "title": "A function to parse modelsettings for simulation runs", "topics": [ "generate_modelsettings" ] }, { "page": "generate_plotly", "title": "A helper function that takes simulation results and produces plotly plots", "topics": [ "generate_plotly" ] }, { "page": "generate_shinyinput", "title": "A helper function that takes a model and generates shiny UI elements", "topics": [ "generate_shinyinput" ] }, { "page": "generate_text", "title": "A helper function that takes result from the simulators and produces text output", "topics": [ "generate_text" ] }, { "page": "hayden96flu", "title": "Influenza virus load data", "topics": [ "hayden96flu" ] }, { "page": "run_model", "title": "A function that runs an app for specific settings and processes results for plot and text generation", "topics": [ "run_model" ] }, { "page": "schirm20strep", "title": "Streptococcus pneumoniae infection data", "topics": [ "schirm20strep" ] }, { "page": "simulate_acutevirusir_ode", "title": "Acute Virus Infection and IR Model", "topics": [ "simulate_acutevirusir_ode" ] }, { "page": "simulate_bacteria_fit", "title": "Fitting a simple bacteria infection models to Streptococcus pneumoniae infection data", "topics": [ "simulate_bacteria_fit" ] }, { "page": "simulate_basicbacteria_discrete", "title": "Basic Bacteria model - discrete", "topics": [ "simulate_basicbacteria_discrete" ] }, { "page": "simulate_basicbacteria_modelexploration", "title": "Simulation to illustrate parameter scan of the basic bacteria model #'", "topics": [ "simulate_basicbacteria_modelexploration" ] }, { "page": "simulate_basicbacteria_ode", "title": "Basic Bacteria model - ODE", "topics": [ "simulate_basicbacteria_ode" ] }, { "page": "simulate_basicvirus_fit", "title": "Fitting a simple viral infection models to influenza data", "topics": [ "simulate_basicvirus_fit" ] }, { "page": "simulate_basicvirus_modelexploration", "title": "Simulation to illustrate parameter scan of the basic virus model #'", "topics": [ "simulate_basicvirus_modelexploration" ] }, { "page": "simulate_basicvirus_ode", "title": "Basic Virus Model", "topics": [ "simulate_basicvirus_ode" ] }, { "page": "simulate_basicvirus_stochastic", "title": "Basic Virus Model", "topics": [ "simulate_basicvirus_stochastic" ] }, { "page": "simulate_chronicvirusir_ode", "title": "Chronic Virus Infection and IR Model", "topics": [ "simulate_chronicvirusir_ode" ] }, { "page": "simulate_confint_fit", "title": "Fit a simple viral infection model and compute confidence intervals", "topics": [ "simulate_confint_fit" ] }, { "page": "simulate_drugresistance_stochastic", "title": "Stochastic simulation of a compartmental acute virus infection model with treatment and drug resistant strain", "topics": [ "simulate_drugresistance_stochastic" ] }, { "page": "simulate_extendedbacteria_ode", "title": "Extended Bacteria model - ODE", "topics": [ "simulate_extendedbacteria_ode" ] }, { "page": "simulate_fludrug_fit", "title": "Fitting a simple viral infection model with 2 types of drug mechanisms to influenza data", "topics": [ "simulate_fludrug_fit" ] }, { "page": "simulate_modelcomparison_fit", "title": "Fitting 2 simple viral infection models to influenza data", "topics": [ "simulate_modelcomparison_fit" ] }, { "page": "simulate_modelvariants_ode", "title": "Simulation of a viral infection model with immune response The simulation illustrates different alternative models.", "topics": [ "simulate_modelvariants_ode" ] }, { "page": "simulate_pkpdmodel_ode", "title": "PkPd Virus model", "topics": [ "simulate_pkpdmodel_ode" ] 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